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Citation

How to cite ScanMST in your research.

BibTeX

If you use ScanMST in your research, please cite:

@software{scanmst2026,
  title={Structural variation reshapes the transcriptome by generating pervasive multi-segment transcripts},
  author={Wang, Ting-You and Yang, Rendong},
  year={2026},
  url={https://github.com/ylab-hi/ScanMST},
}

MLA Style

Wang, Ting-You, and Rendong Yang. Structural variation reshapes the transcriptome by generating pervasive multi-segment transcripts, 2026, https://github.com/ylab-hi/ScanMST.

Chicago Style

Wang, Ting-You, and Rendong Yang. 2026. "Structural variation reshapes the transcriptome by generating pervasive multi-segment transcripts" https://github.com/ylab-hi/ScanMST.

Plain Text

Structural variation reshapes the transcriptome by generating pervasive multi-segment transcripts
Ting-You Wang, Rendong Yang
2026
https://github.com/ylab-hi/ScanMST

Citing Specific Version

To cite a specific version of ScanMST:

@software{scanmst2026,
  title={Structural variation reshapes the transcriptome by generating pervasive multi-segment transcripts},
  author={Wang, Ting-You, Li, Yangyang, Liu, Qi and Yang, Rendong},
  year={2026},
  url={https://github.com/ylab-hi/ScanMST},
  doi={XX.XXXX/zenodo.XXXXXXX}  # Replace with actual DOI when available
}

Acknowledgments

ScanMST builds upon several open-source projects:

  • Pyabpoa: Partial Order Alignment
  • pysam: BAM/SAM/CRAM file processing
  • HTSeq: High-throughput sequencing data analysis

Questions?

For citation-related questions, contact: